Trend and impact of plant cell publications: a bibliometric analysis of global research output from 1992 to 2016

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Trang Ngoc Kieu Nguyen, Yuh-Shan Ho


The objective of this writing was to conduct a bibliometric analysis of all plant cell publications during the period from 1992 to 2016 by using the Science Citation Index Expanded (SCI-EXPANDED) in the Clarivate Analytics Web of Science database. Basic analysis includes document types, languages, journals, Web of Science categories, distribution by countries and institutes. Indicators such as total, independent, collaborative, first author, corresponding author, and single author publications were applied to compare publication performances by specific countries and institutions of the top ranking. The G7 dominated most of the high impact publications in plant cell research. The high-ranked contributing institutions were non-universities from France, China, Russia, Spain, and USA. University of Tokyo in Japan was the most productive university single out on the top. Plant cell articles were published mainly in Web of Science of plant sciences. Plant Physiology, Plant Journal, and Plant Cell were the top three productive journals on this subject. In addition, top cited and the high impact articles in recent years were also compared. Distributions of words in title, author keywords, and KeyWords Plus in different periods were used for searching research focuses.


plant cells; citations per publication; publication trends; Web of Science core collection; front page

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Abad, P., Gouzy, J., Aury, J.M., Castagnone-Sereno, P., Danchin, E.G.J., Deleury, E., Perfus-Barbeoch, L., Anthouard, V., Artiguenave, F., Blok, V.C., Caillaud, M.C., Coutinho, P.M., Dasilva, C., De Luca, F., Deau, F., Esquibet, M., Flutre, T., Goldstone, J.V., Hamamouch, N., Hewezi, T., Jaillon, O., Jubin, C., Leonetti, P., Magliano, M., Maier, T.R., Markov, G.V., McVeigh, P., Pesole, G., Poulain, J., Robinson-Rechavi, M., Sallet, E., Segurens, B., Steinbach, D., Tytgat, T., Ugarte, E., van Ghelder, C., Veronico, P., Baum, T.J., Blaxter, M., Bleve-Zacheo, T., Davis, E.L., Ewbank, J.J., Favery, B., Grenier, E., Henrissat, B., Jones, J.T., Laudet, V., Maule, A.G., Quesneville, H., Rosso, M.N., Schiex, T., Smant, G., Weissenbach, J. and Wincker, P. (2008), Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology, 26 (8), 909-915.

Adl, S.M., Simpson, G.B., Lane, C.E., Lukes, J., Bass, D., Bowser, S.S., Brown, M.W., Burki, F., Micah, D., Vladimir, H., Aaron, H., Mona, H., Enrique, L., Line, L.G., Denis, H.L., Mcmanus, H., Edward, A.D.M., Sharon, E.M., Parfrey, L.W., Pawlowski, J., Sonja, R., Shadwick, L., Conrad, L.S., Alexey, S. and Frederick, W.S (2012), The revised classification of eukaryotes. Journal of Eukaryotic Microbiology, 59 (5), 429-493.

Alscher, R.G., Erturk, N. and Heath, L.S. (2002), Role of superoxide dismutases (SODs) in controlling oxidative stress in plants. Journal of Experimental Botany, 53 (372), 1331-1341.

Blokhina, O., Virolainen, E. and Fagerstedt, K.V. (2003), Antioxidants, oxidative damage and oxygen deprivation stress: A review. Annals of Botany, 91 (S2), 179-194.

Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A. and Bonas, U. (2009), Breaking the code of DNA binding specificity of TAL-Type III effectors. Science, 326 (5959), 1509-1512.

Boller, T and Kende, H (1979), Hydrolytic Enzymes in the Central Vacuole of Plant Cells. Plant Physiology, 63 (6), 1123-1132.

Bradley, D.J., Kjellbom, P. and Lamb, C.J. (1992), Elicitor-induced and wound-induced oxidative cross-linking of a proline-rich plant-cell wall protein: A novel, rapid defense response. Cell, 70 (1), 21-30.

Burton, R.A. and Fincher, G.B. (2014), Plant cell wall engineering: applications in biofuel production and improved human health. Current Opinion in Biotechnology, 26, 79-84.

Cavalier-Smith, T. (2009), Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree. Biology Letters, 6 (3), 342-345.

Chen, H.Q. and Ho, Y.S. (2015), Highly cited articles in biomass research: A bibliometric analysis. Renewable & Sustainable Energy Reviews, 49, 12-20.

Chiu, W.L., Niwa, Y., Zeng, W., Hirano, T., Kobayashi, H. and Sheen, J. (1996), Engineered GFP as a vital reporter in plants. Current Biology, 6 (3), 325-330.

Chiu, W.T. and Ho, Y.S. (2007), Bibliometric analysis of tsunami research. Scientometrics, 73 (1), 3-17.

Chuang, K.Y. and Ho, Y.S. (2015), An evaluation based on highly cited publications in Taiwan. Current Science, 108 (5), 933-941.

Chuang, K.Y., Wang, M.H. and Ho, Y.S. (2011), High-impact papers presented in the subject category of water resources in the Essential Science Indicators database of the Institute for Scientific Information. Scientometrics, 87 (3), 551-562.

Chuang, K.Y., Olaiya, M.U. and Ho, Y.S. (2012), Bibliometric analysis of the Polish Journal of Environmental Studies (2000-11). Polish Journal of Environmental Studies, 21 (5), 1175-1183.

Cosgrove, D.J. (2005), Growth of the plant cell wall. Nature Reviews Molecular Cell Biology, 6, 850-861.

Elango, B. and Ho, Y.S. (2017), A bibliometric analysis of highly cited papers from India in Science Citation Index Expanded. Current Science, 112 (8), 1653-1658.

Foreman, J., Demidchik, V., Bothwell, J.H.F., Mylona, P., Miedema, H., Torres, M.A., Linstead, P., Costa, S., Brownlee, C., Jones, J.D.G., Davies, J.M. and Dolan, L. (2003), Reactive oxygen species produced by NADPH oxidase regulate plant cell growth. Nature, 422 (6930), 442-446.

Fu, H.Z. and Ho, Y.S. (2013), Comparison of independent research of China’s top universities using bibliometric indicators. Scientometrics, 96 (1), 259-276.

Fu, H.Z. and Ho, Y.S. (2014), Top cited articles in adsorption research using Y-index. Research Evaluation, 23 (1), 12-20.

Fu, H.Z. and Ho, Y.S. (2015), A bibliometric analysis of the Journal of Membrane Science (1976-2010). Electronic Library, 33 (4), 698-713.

Fu, H.Z., Wang, M.H. and Ho, Y.S. (2012), The most frequently cited adsorption research articles in the Science Citation Index (Expanded). Journal of Colloid and Interface Science, 379 (1), 148-156.

Fu, H.Z., Wang, M.H. and Ho, Y.S. (2013), Mapping of drinking water research: A bibliometric analysis of research output during 1992-2011. Science of the Total Environment, 443, 757-765.

Garfield, E. (1990), KeyWords Plus takes you beyond title words. Part 2. Expanded journal coverage for Current Contents on Diskette, includes social and behavioral sciences. Current Contents, 33, 5-9.

Garfield, E. (1990), KeyWords Plus: ISI’s breakthrough retrieval method. Part 1. Expanding your searching power on Current Contents on Diskette. Current Contents, 32, 5-9.

Gautheret, R.J. (1983), Plant tissue culture: A history. Botanical Magazine Tokyo, 96 (4), 393-410.

Grasso, C. (1993), The experimental philosophy of farming: Jared eliot and the cultivation of connecticut. Omohundro Institute of Early American History and Culture, 50 (3), 502-528.

Guimaraes, J.A. and Carlini, C.R. (2004), Most cited papers in Toxicon. Toxicon, 44 (4), 345-359.

Gunning, B.E.S. and Pate, J.S. (1969), “Transfer cells” Plant cells with wall ingrowths, specialized in relation to short distance transport of solutes - Their occurrence, structure, and development. Protoplasma, 68, 107-133.

Ho, Y.S. (2012), Top-cited articles in chemical engineering in Science Citation Index Expanded: A bibliometric analysis. Chinese Journal of Chemical Engineering, 20 (3), 478-488.

Ho, Y.S. (2014), Classic articles on social work field in Social Science Citation Index: A bibliometric analysis. Scientometrics, 98 (1), 137-155.

Ho, Y.S. and Fu, H.Z. (2016), Mapping of metal-organic frameworks publications: A bibliometric analysis. Inorganic Chemistry Communications, 73, 174-182.

Ho, Y.S. and Kahn, M. (2014), A bibliometric study of highly cited reviews in the Science Citation Index Expanded™. Journal of the Association for Information Science and Technology, 65 (2), 372-385.

Hussain, M.S., Fareed, S., Ansari, S., Rahman, M.A., Ahmad, I.Z. and Saeed, M. (2012), Current approaches toward production of secondary plant metabolites. Journal of Pharmacy & Bioallied Sciences, 4 (1), 10-20.

Jean-Marc, N. and John, C.R. (1998), Sorting of proteins to vacuoles in plant cells. Plant Molecular Biology, 38, 127-144.

Jin, H. and Martin, C. (1999), Multifunctionality and diversity within the plant MYB-gene family. Plant Molecular Biology, 41, 577-585.

Jones, L., Seymour, G.B. and Knox, J.P. (1997), Localization of pectic galactan in tomato cell walls using a monoclonal antibody specific to (1,4)-β-D-galactan. Plant Physiology, 113(4), 1405-1412.

Kaku, H., Nishizawa, Y., Ishii-Minami, N., Akimoto-Tomiyama, C., Dohmae, N., Takio, K., Minami, E. and Shibuya, N. (2006), Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proceedings of the National Academy of Sciences of the United States of America, 103 (29), 11086-11091.

Karley, A.J., Douglas, A.E. and Parker, W.E. (2002), Amino acid composition and nutritional quality of potato leaf phloem sap for aphids. Journal of Experimental Biology, 205, 30090-3018.

Khvorova, A., Reynolds, A. and Jayasena, S.D. (2003), Functional siRNAs and miRNAs exhibit strand bias. Cell, 115 (2), 209-216.

Kooten, O. and Snel, J.F.H. (1990), The use of chlorophyll fluorescence nomenclature in plant stress physiology. Photosynthesis Research, 25, 147-150.

Li, J.F., Zhang, Y.H., Wang, X.S. and Ho, Y.S. (2009b), Bibliometric analysis of atmospheric simulation trends in meteorology and atmospheric science journals. Croatica Chemica Acta, 82 (3), 695-705.

Li, L.L., Ding, G.H., Feng, N., Wang, M.H. and Ho, Y.S. (2009a), Global stem cell research trend: Bibliometric analysis as a tool for mapping of trends from 1991 to 2006. Scientometrics, 80 (1), 39-58.

Li, Z. and Ho, Y.S. (2008), Use of citation per publication as an indicator to evaluate contingent valuation research. Scientometrics, 75 (1), 97-110.

Lin, C.L. and Ho, Y.S. (2015), A bibliometric analysis of publications on pluripotent stem cell research. Cell Journal, 17 (1), 59-70.

Martin, F., Aerts, A., Ahren, D., Brun, A., Danchin, E.G.J., Duchaussoy, F., Gibon, J., Kohler, A., Lindquist, E., Pereda, V., Salamov, A., Shapiro, H.J., Wuyts, J., Blaudez, D., Buee, M., Brokstein, P., Canback, B., Cohen, D., Courty, P.E., Coutinho, P.M., Delaruelle, C., Detter, J.C., Deveau, A., DiFazio, S., Duplessis, S., Fraissinet-Tachet, L., Lucic, E., Frey-Klett, P., Fourrey, C., Feussner, I., Gay, G., Grimwood, J., Hoegger, P.J., Jain, P., Kilaru, S., Labbe, J., Lin, Y.C., Legue, V., Le Tacon, F., Marmeisse, R., Melayah, D., Montanini, B., Muratet, M., Nehls, U., Niculita-Hirzel, H., Oudot-Le Secq, M.P., Peter, M., Quesneville, H., Rajashekar, B., Reich, M., Rouhier, N., Schmutz, J., Yin, T., Chalot, M., Henrissat, B., Kues, U., Lucas, S., Van de Peer, Y., Podila, G.K., Polle, A., Pukkila, P.J., Richardson, P.M., Rouze, P., Sanders, I.R., Stajich, J.E., Tunlid, A., Tuskan, G. and Grigoriev, I.V. (2008), The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature, 452 (7183), 88-92.

Martinez, D., Berka, R.M., Henrissat, B., Saloheimo, M., Arvas, M., Baker, S.E., Chapman, J., Chertkov, O., Coutinho, P.M., Cullen, D., Danchin, E.G.J., Grigoriev, I.V., Harris, P., Jackson, M., Kubicek, C.P., Han, C.S., Ho, I., Larrondo, L.F., de Leon, A.L., Magnuson, J.K., Merino, S., Misra, M., Nelson, B., Putnam, N., Robbertse, B., Salamov, A.A., Schmoll, M., Terry, A., Thayer, N., Westerholm-Parvinen, A., Schoch, C.L., Yao, J., Barabote, R., Nelson, M.A., Detter, C., Bruce, D., Kuske, C.R., Xie, G., Richardson, P., Rokhsar, D.S., Lucas, S.M., Rubin, E.M., Dunn-Coleman, N., Ward, M. and Brettin, T.S. (2008), Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nature Biotechnology, 26 (5), 553-560.

Mitani, Y., Oshima, Y., Mitsuda, N., Tomioka, A., Sukegawa, M., Fujita, M., Kaji, H. and Ohmiya, Y. (2017), Efficient production of glycosylated Cypridina luciferase using plant cells. Protein Expression and Purification, 133, 102-109.

Morant, M., Jorgensen, K., Schaller, H., Pinot, F., Moller, B.L., Werck-Reichhart, D. and Bak, S. (2007), Hydroxylation of lauric acid to provide building blocks for sporopollenin synthesis in pollen. Plant Cell, 19, 1473-1487.

Morant, M., Jørgensen, K., Schaller, H., Pinot, F., Møller, B.L., Werck-Reichhart, D. and Bak, S. (2007), CYP703 is an ancient cytochrome P450 in land plants catalyzing in-chain hydroxylation of lauric acid to provide building blocks for sporopollenin synthesis in pollen. Plant Cell, 19 (5), 1473-1487.

Picknett, T, Davis, K (1999), The 100 most-cited articles from JMB. Journal of Molecular Biology, 293 (2), 173–176.

Pollard, D.T. and Cooper, J. A. (2009), Actin, a Central Player in Cell Shape and Movement. Science, 326, 1208-1212.

Raghavendra, A.S., Padmasree, K. and Saradadevi, K. (1994), Interdependence of photosynthesis and respiration in plant cells: interactions between chloroplasts and mitochondria. Plant Science, 97 (1), 1-14.

Ridley, B.L., O’Neill, M.A. and Mohnen, D.A. (2001), Pectins: Structure, biosynthesis, and oligogalacturonide-related signaling. Phytochemistry, 57 (6), 929-967.

Slowing, I.I., Trewyn, B.G., Giri, S. and Lin, V.S.Y. (2007), Mesoporous silica nanoparticles for drug delivery and biosensing applications. Advanced Functional Materials, 17 (8), 1225-1236.

Stals, H. and Inzé, D. (2001), When plant cells decide to divide. Trends in Plant Science, 6 (8), 359-364.

Tan, J., Fu, H.Z. and Ho, Y.S. (2014), A bibliometric analysis of research on proteomics in Science Citation Index Expanded. Scientometrics, 98 (2), 1473-1490.

Thomas, B. and Hans, K. (1979), Hydrolytic enzymes in the central vacuole of plant cells. Plant Physiology, 63 (6), 1123-1132.

Thomas, D.P. and John A.C (2009), Actin, a central player in cell shape and movement. Science, 326 (27), 1208-1212.

Thorpe, T.A. (2007), History of plant tissue culture. Molecular Biotechnology, 37 (2), 169-180.

Torney, F., Trewyn, B.G., Lin, V.S.Y. and Wang, K. (2007), Mesoporous silica nanoparticles deliver DNA and chemicals into plants. Nature Nanotechnology, 2 (5), 295-300.

Vasil, I. (2008), A history of plant biotechnology: from the cell theory of schleiden and schwann to biotech crops. Plant Cell Reports, 27 (9), 423-1440.

Voinnet, O. (2015), An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus (vol 33, pg 949, 2003). Plant Journal, 83 (4), 752.

Voinnet, O., Rivas, S., Mestre, P. and Baulcombe, D. (2003), An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus (Retracted article. See vol. 84, pg. 846, 2015). Plant Journal, 33 (5), 949-956.

Voinnet, O., Rivas, S., Mestre, P. and Baulcombe, D. (2015), An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus (Retraction of Vol 33, Pg 949, 2003). Plant Journal, 84 (4), 846.

Wambu, E.W. and Ho, Y.S. (2016), A bibliometric analysis of drinking water research in Africa. Water SA, 42 (4), 612-620.

Wambu, E.W., Fu, H.Z. and Ho, Y.S. (2017), Characteristics and trends in global tea research: A Science Citation Index Expanded-based analysis. International Journal of Food Science and Technology, 52 (3), 644-651.

Wang, C.C. and Ho, Y.S. (2016), Research trend of metal-organic frameworks: A bibliometric analysis. Scientometrics, 109 (1), 481-513.

Wang, M.H., Fu, H.Z. and Ho, Y.S. (2011), Comparison of universities’ scientific performance using bibliometric indicators. Malaysian Journal of Library & Information Science, 16 (2), 1-19.

Wang, M.H., Yu, T.C. and Ho, Y.S. (2010), A bibliometric analysis of the performance of Water Research. Scientometrics, 84 (3), 813-820.

Yu, J.J., Wang, M.H., Xu, M. and Ho, Y.S. (2012), A bibliometric analysis of research papers published on photosynthesis: 1992-2009. Photosynthetica, 51 (1), 5-14.

Zheng, M.S., Fu, H.Z. and Ho, Y.S. (2017), Research trends and hotspots related to ammonia oxidation based on bibliometric analysis. Environmental Science and Pollution Research, 24 (25), 20409-20421.

Zhong, R. and Zheng, H.Y. (2007), Regulation of cell wall biosynthesis. Current Opinion in Plant Biology, 10 (6), 564-572.

Zwieniecki, M.A., Melcher, P.J. and Holbrook, N.M. (2001), Hydrogel control of xylem hydraulic resistance in plants. Science, 291, 1059-1062.



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